view
usage: blobtools view -i <BLOBDB> [-x <TAXRULE>] [--rank <TAXRANK>...] [--hits]
[--list <LIST>] [--out <OUT>] [--notable]
[--concoct] [--cov] [--experimental]
[--h|--help]
Options:
--h --help show this
-i, --input <BLOBDB> BlobDB file (created with "blobtools create")
-o, --out <OUT> Output prefix
-l, --list <LIST> List of sequence names (file).
-x, --taxrule <TAXRULE> Taxrule used for computing taxonomy
(supported: "bestsum", "bestsumorder")
[default: bestsum]
-r, --rank <TAXRANK>... Taxonomic rank(s) at which output will be written.
(supported: 'species', 'genus', 'family', 'order',
'phylum', 'superkingdom', 'all') [default: phylum]
-b, --hits Displays taxonomic hits from tax files
that contributed to the taxonomy.
--concoct Generate concoct files [default: False]
--cov Generate cov files [default: False]
--experimental Experimental output [default: False]
-n, --notable Do not generate table view [default: False]
Updated about 7 years ago