NodesDB file
Why is it needed?
- During the taxonomic annotation process, BlobTools uses a nodesDB file to infer the taxonomy at each rank for each of the hits in a hits file based on the taxID of the hit
- A nodesDB file is a "condensed" version of NCBI's
nodes.dmp
andnames.dmp
files and faster to parse. - When the BlobTools is installed using the
install
script, it will automatically construct a nodesDB file.
Format
- A header indicating the number of nodes, followed by TAB-separated lines containing
- TaxID of node
- Taxonomic rank of node
- Name of node
- TaxID of parent node
Updated over 7 years ago