For AI agents: visit https://blobtools.readme.io/llms.txt for an index of all pages formatted in Markdown and endpoints in OpenAPI.
Jump to Content
BlobToolsGuidesBlobTools on GitHubSupport
GuidesAPI Reference
BlobTools v1.0

GuidesBlobTools on GitHubSupportBlobTools
Guides
BlobTools v1.0
BlobTools

Main

  • BlobTools
  • Installation
  • Citing BlobTools

FAQ

  • Frequently Asked Questions

Workflows

  • BlobTools Workflows
  • My first blobplot

How does it work?

  • Taxonomic annotation
  • Coverage parsing

Modules

  • create
  • view
  • plot
  • covplot
  • map2cov
  • seqfilter
  • taxify
  • bamfilter

File formats

  • Assembly file
  • Coverage file
  • Hits file
  • NodesDB file
  • TaxID-mapping file

Glossary

  • Taxonomy
  • Taxrule
  • TaxID
  • Taxonomic rank
  • BlobPlot
  • CovPlot
  • ReadCovPlot
Powered by 

BlobTools

Suggest Edits

Once we were blobs in the sea...

-Terry Pratchett, A Hat Full of Sky


General description

A modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets

Use cases


De-novo genome projects

BlobTools Workflow A


Genome re-sequencing projects

BlobTools Workflow B


  • Table of Contents
    • General description
    • Use cases
    • De-novo genome projects
    • Genome re-sequencing projects