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Software requirements

  • UNIX system (bash, wget, tar, make, gunzip)
  • Python 2.7
  • pip
  • git


# download blobtools
git clone 
cd blobtools

The installation script

  • takes care of all Python dependencies through pip
  • downloads a copy of NCBI TaxDump and creates a nodesDB.txt file in blobtools/data/. BlobTools will use this file for linking TaxIDs to NCBI taxonomies
  • installs a copy of samtools 1.5 into the folder blobtools/samtools/, which is used when processing BAM files