{"__v":0,"_id":"5798a834c8c9cb0e0098874f","category":{"__v":0,"_id":"57989a8817ced017003c4c69","project":"57618347b65324200072d6a5","version":"57618347b65324200072d6a8","sync":{"url":"","isSync":false},"reference":false,"createdAt":"2016-07-27T11:27:04.750Z","from_sync":false,"order":3,"slug":"docstrings","title":"Documentation"},"parentDoc":null,"project":"57618347b65324200072d6a5","user":"57617c8caa540f3600bfed20","version":{"__v":8,"_id":"57618347b65324200072d6a8","project":"57618347b65324200072d6a5","createdAt":"2016-06-15T16:33:11.587Z","releaseDate":"2016-06-15T16:33:11.587Z","categories":["57618347b65324200072d6a9","5761912d207db7170022fbe9","57619455a7c9f729009a74e0","576e8ae1f37ab41700147471","5797b8e5209a6e0e00b8321b","57989a8817ced017003c4c69","579ca6f3d46f960e0029a8ec","579ca703fefb1d0e00c94f06"],"is_deprecated":false,"is_hidden":false,"is_beta":false,"is_stable":true,"codename":"blobtools v0.9.19","version_clean":"0.9.19","version":"0.9.19"},"updates":[],"next":{"pages":[],"description":""},"createdAt":"2016-07-27T12:25:24.323Z","link_external":false,"link_url":"","githubsync":"","sync_unique":"","hidden":false,"api":{"results":{"codes":[]},"settings":"","auth":"required","params":[],"url":""},"isReference":false,"order":6,"body":"[block:code]\n{\n  \"codes\": [\n    {\n      \"code\": \"usage: blobtools taxify          -i BLAST [-d FILE] [-r FILE] [-t INT]\\n                                    [-o PREFIX] [-h|--help]\\n\\n    Options:\\n        -h --help                     show this\\n        -i, --infile <TAXFILE>        Similarity search results of sequences\\n                                        (BLAST/Diamond TSV format)\\n        -d, --diamond <TAXIDS>        Diamond TAXID file\\n        -r, --rnacentral <TAXIDS>     RNAcentral TAXID file\\n        -t, --taxid <INT>             TAXID (must be integer)\\n        -o, --out <PREFIX>            Output prefix\\n\",\n      \"language\": \"text\"\n    }\n  ]\n}\n[/block]","excerpt":"","slug":"taxify","type":"basic","title":"taxify"}
[block:code] { "codes": [ { "code": "usage: blobtools taxify -i BLAST [-d FILE] [-r FILE] [-t INT]\n [-o PREFIX] [-h|--help]\n\n Options:\n -h --help show this\n -i, --infile <TAXFILE> Similarity search results of sequences\n (BLAST/Diamond TSV format)\n -d, --diamond <TAXIDS> Diamond TAXID file\n -r, --rnacentral <TAXIDS> RNAcentral TAXID file\n -t, --taxid <INT> TAXID (must be integer)\n -o, --out <PREFIX> Output prefix\n", "language": "text" } ] } [/block]